jacquard/variant_caller_transforms/variant_caller_factory.py
def claim(self, unclaimed_file_readers):
        """Allows each caller to claim incoming files as they are recognized.

        Args:
            unclaimed_file_readers: Usually, all files in the input dir.

        Returns:
            A tuple of unclaimed file readers and claimed VcfReaders. The
            presence of any unclaimed file readers could indicate stray files
            in the input dir.
        """
        claimed_vcf_readers = []
        for caller in self._callers:
            (unclaimed_file_readers,
             translated_vcf_readers) = caller.claim(unclaimed_file_readers)
            claimed_vcf_readers.extend(translated_vcf_readers)

        return unclaimed_file_readers, claimed_vcf_readers
def claim(self, unclaimed_file_readers):
        """Allows each caller to claim incoming files as they are recognized.

        Args:
            unclaimed_file_readers: Usually, all files in the input dir.

        Returns:
            A tuple of unclaimed file readers and claimed VcfReaders. The
            presence of any unclaimed file readers could indicate stray files
            in the input dir.
        """
        claimed_vcf_readers = []
        for caller in self._callers:
            (unclaimed_file_readers,
             translated_vcf_readers) = caller.claim(unclaimed_file_readers)
            claimed_vcf_readers.extend(translated_vcf_readers)

        return unclaimed_file_readers, claimed_vcf_readers
def claim ( self , unclaimed_file_readers ) : claimed_vcf_readers = [ ] for caller in self . _callers : ( unclaimed_file_readers , translated_vcf_readers ) = caller . claim ( unclaimed_file_readers ) claimed_vcf_readers . extend ( translated_vcf_readers ) return unclaimed_file_readers , claimed_vcf_readers
Allows each caller to claim incoming files as they are recognized.

        Args:
            unclaimed_file_readers: Usually, all files in the input dir.

        Returns:
            A tuple of unclaimed file readers and claimed VcfReaders. The
            presence of any unclaimed file readers could indicate stray files
            in the input dir.
Allows each caller to claim incoming files as they are recognized .