scout/server/blueprints/variants/controllers.py
def ucsc_link(variant_obj, build=None):
    """Compose link to UCSC."""
    build = build or 37
    url_template = ("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&"
                        "position=chr{this[chromosome]}:{this[position]}"
                        "-{this[position]}&dgv=pack&knownGene=pack&omimGene=pack")
    if build == 38:
        url_template = ("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg20&"
                        "position=chr{this[chromosome]}:{this[position]}"
                        "-{this[position]}&dgv=pack&knownGene=pack&omimGene=pack")

    return url_template.format(this=variant_obj)
def ucsc_link(variant_obj, build=None):
    """Compose link to UCSC."""
    build = build or 37
    url_template = ("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&"
                        "position=chr{this[chromosome]}:{this[position]}"
                        "-{this[position]}&dgv=pack&knownGene=pack&omimGene=pack")
    if build == 38:
        url_template = ("http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg20&"
                        "position=chr{this[chromosome]}:{this[position]}"
                        "-{this[position]}&dgv=pack&knownGene=pack&omimGene=pack")

    return url_template.format(this=variant_obj)
def ucsc_link ( variant_obj , build = None ) : build = build or 37 url_template = ( "http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&" "position=chr{this[chromosome]}:{this[position]}" "-{this[position]}&dgv=pack&knownGene=pack&omimGene=pack" ) if build == 38 : url_template = ( "http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg20&" "position=chr{this[chromosome]}:{this[position]}" "-{this[position]}&dgv=pack&knownGene=pack&omimGene=pack" ) return url_template . format ( this = variant_obj )
Compose link to UCSC.
Compose link to UCSC .