pyprophet/stats.py
def summary_err_table(df, qvalues=[0, 0.01, 0.02, 0.05, 0.1, 0.2, 0.3, 0.4, 0.5]):
    """ Summary error table for some typical q-values """

    qvalues = to_one_dim_array(qvalues)
    # find best matching fows in df for given qvalues:
    ix = find_nearest_matches(np.float32(df.qvalue.values), qvalues)
    # extract sub table
    df_sub = df.iloc[ix].copy()
    # remove duplicate hits, mark them with None / NAN:
    for i_sub, (i0, i1) in enumerate(zip(ix, ix[1:])):
        if i1 == i0:
            df_sub.iloc[i_sub + 1, :] = None
    # attach q values column
    df_sub.qvalue = qvalues
    # remove old index from original df:
    df_sub.reset_index(inplace=True, drop=True)
    return df_sub[['qvalue','pvalue','svalue','pep','fdr','fnr','fpr','tp','tn','fp','fn','cutoff']]
def summary_err_table(df, qvalues=[0, 0.01, 0.02, 0.05, 0.1, 0.2, 0.3, 0.4, 0.5]):
    """ Summary error table for some typical q-values """

    qvalues = to_one_dim_array(qvalues)
    # find best matching fows in df for given qvalues:
    ix = find_nearest_matches(np.float32(df.qvalue.values), qvalues)
    # extract sub table
    df_sub = df.iloc[ix].copy()
    # remove duplicate hits, mark them with None / NAN:
    for i_sub, (i0, i1) in enumerate(zip(ix, ix[1:])):
        if i1 == i0:
            df_sub.iloc[i_sub + 1, :] = None
    # attach q values column
    df_sub.qvalue = qvalues
    # remove old index from original df:
    df_sub.reset_index(inplace=True, drop=True)
    return df_sub[['qvalue','pvalue','svalue','pep','fdr','fnr','fpr','tp','tn','fp','fn','cutoff']]
def summary_err_table ( df , qvalues = [ 0 , 0.01 , 0.02 , 0.05 , 0.1 , 0.2 , 0.3 , 0.4 , 0.5 ] ) : qvalues = to_one_dim_array ( qvalues ) # find best matching fows in df for given qvalues: ix = find_nearest_matches ( np . float32 ( df . qvalue . values ) , qvalues ) # extract sub table df_sub = df . iloc [ ix ] . copy ( ) # remove duplicate hits, mark them with None / NAN: for i_sub , ( i0 , i1 ) in enumerate ( zip ( ix , ix [ 1 : ] ) ) : if i1 == i0 : df_sub . iloc [ i_sub + 1 , : ] = None # attach q values column df_sub . qvalue = qvalues # remove old index from original df: df_sub . reset_index ( inplace = True , drop = True ) return df_sub [ [ 'qvalue' , 'pvalue' , 'svalue' , 'pep' , 'fdr' , 'fnr' , 'fpr' , 'tp' , 'tn' , 'fp' , 'fn' , 'cutoff' ] ]
Summary error table for some typical q-values
Summary error table for some typical q - values