def folderScan(self,abfFolder=None):
        """populate class properties relating to files in the folder."""
        if abfFolder is None and 'abfFolder' in dir(self):
            abfFolder=self.abfFolder
        else:
            self.abfFolder=abfFolder
        self.abfFolder=os.path.abspath(self.abfFolder)
        self.log.info("scanning [%s]",self.abfFolder)
        if not os.path.exists(self.abfFolder):
            self.log.error("path doesn't exist: [%s]",abfFolder)
            return
        self.abfFolder2=os.path.abspath(self.abfFolder+"/swhlab/")
        if not os.path.exists(self.abfFolder2):
            self.log.error("./swhlab/ doesn't exist. creating it...")            
            os.mkdir(self.abfFolder2)
        self.fnames=os.listdir(self.abfFolder)
        self.fnames2=os.listdir(self.abfFolder2)
        self.log.debug("./ has %d files",len(self.fnames))
        self.log.debug("./swhlab/ has %d files",len(self.fnames2))
        self.fnamesByExt = filesByExtension(self.fnames)
        if not "abf" in self.fnamesByExt.keys():
            self.log.error("no ABF files found")
        self.log.debug("found %d ABFs",len(self.fnamesByExt["abf"]))
        
        self.cells=findCells(self.fnames) # list of cells by their ID
        self.log.debug("found %d cells"%len(self.cells))
        
        self.fnamesByCell = filesByCell(self.fnames,self.cells) # only ABFs
        self.log.debug("grouped cells by number of source files: %s"%\
            str([len(self.fnamesByCell[elem]) for elem in self.fnamesByCell]))
def folderScan(self,abfFolder=None):
        """populate class properties relating to files in the folder."""
        if abfFolder is None and 'abfFolder' in dir(self):
            abfFolder=self.abfFolder
        else:
            self.abfFolder=abfFolder
        self.abfFolder=os.path.abspath(self.abfFolder)
        self.log.info("scanning [%s]",self.abfFolder)
        if not os.path.exists(self.abfFolder):
            self.log.error("path doesn't exist: [%s]",abfFolder)
            return
        self.abfFolder2=os.path.abspath(self.abfFolder+"/swhlab/")
        if not os.path.exists(self.abfFolder2):
            self.log.error("./swhlab/ doesn't exist. creating it...")            
            os.mkdir(self.abfFolder2)
        self.fnames=os.listdir(self.abfFolder)
        self.fnames2=os.listdir(self.abfFolder2)
        self.log.debug("./ has %d files",len(self.fnames))
        self.log.debug("./swhlab/ has %d files",len(self.fnames2))
        self.fnamesByExt = filesByExtension(self.fnames)
        if not "abf" in self.fnamesByExt.keys():
            self.log.error("no ABF files found")
        self.log.debug("found %d ABFs",len(self.fnamesByExt["abf"]))
        
        self.cells=findCells(self.fnames) # list of cells by their ID
        self.log.debug("found %d cells"%len(self.cells))
        
        self.fnamesByCell = filesByCell(self.fnames,self.cells) # only ABFs
        self.log.debug("grouped cells by number of source files: %s"%\
            str([len(self.fnamesByCell[elem]) for elem in self.fnamesByCell]))
def folderScan ( self , abfFolder = None ) : if abfFolder is None and 'abfFolder' in dir ( self ) : abfFolder = self . abfFolder else : self . abfFolder = abfFolder self . abfFolder = os . path . abspath ( self . abfFolder ) self . log . info ( "scanning [%s]" , self . abfFolder ) if not os . path . exists ( self . abfFolder ) : self . log . error ( "path doesn't exist: [%s]" , abfFolder ) return self . abfFolder2 = os . path . abspath ( self . abfFolder + "/swhlab/" ) if not os . path . exists ( self . abfFolder2 ) : self . log . error ( "./swhlab/ doesn't exist. creating it..." ) os . mkdir ( self . abfFolder2 ) self . fnames = os . listdir ( self . abfFolder ) self . fnames2 = os . listdir ( self . abfFolder2 ) self . log . debug ( "./ has %d files" , len ( self . fnames ) ) self . log . debug ( "./swhlab/ has %d files" , len ( self . fnames2 ) ) self . fnamesByExt = filesByExtension ( self . fnames ) if not "abf" in self . fnamesByExt . keys ( ) : self . log . error ( "no ABF files found" ) self . log . debug ( "found %d ABFs" , len ( self . fnamesByExt [ "abf" ] ) ) self . cells = findCells ( self . fnames ) # list of cells by their ID self . log . debug ( "found %d cells" % len ( self . cells ) ) self . fnamesByCell = filesByCell ( self . fnames , self . cells ) # only ABFs self . log . debug ( "grouped cells by number of source files: %s" % str ( [ len ( self . fnamesByCell [ elem ] ) for elem in self . fnamesByCell ] ) )
populate class properties relating to files in the folder.
populate class properties relating to files in the folder .