def analyze(fname=False,save=True,show=None):
    """given a filename or ABF object, try to analyze it."""
    if fname and os.path.exists(fname.replace(".abf",".rst")):
        print("SKIPPING DUE TO RST FILE")
        return
    swhlab.plotting.core.IMAGE_SAVE=save
    if show is None:
        if cm.isIpython():
            swhlab.plotting.core.IMAGE_SHOW=True
        else:
            swhlab.plotting.core.IMAGE_SHOW=False
    #swhlab.plotting.core.IMAGE_SHOW=show
    abf=ABF(fname) # ensure it's a class
    print(">>>>> PROTOCOL >>>>>",abf.protocomment)
    runFunction="proto_unknown"
    if "proto_"+abf.protocomment in globals():
        runFunction="proto_"+abf.protocomment
    abf.log.debug("running %s()"%(runFunction))
    plt.close('all') # get ready
    globals()[runFunction](abf) # run that function
    try:
        globals()[runFunction](abf) # run that function
    except:
        abf.log.error("EXCEPTION DURING PROTOCOL FUNCTION")
        abf.log.error(sys.exc_info()[0])
        return "ERROR"
    plt.close('all') # clean up
    return "SUCCESS"
def analyze(fname=False,save=True,show=None):
    """given a filename or ABF object, try to analyze it."""
    if fname and os.path.exists(fname.replace(".abf",".rst")):
        print("SKIPPING DUE TO RST FILE")
        return
    swhlab.plotting.core.IMAGE_SAVE=save
    if show is None:
        if cm.isIpython():
            swhlab.plotting.core.IMAGE_SHOW=True
        else:
            swhlab.plotting.core.IMAGE_SHOW=False
    #swhlab.plotting.core.IMAGE_SHOW=show
    abf=ABF(fname) # ensure it's a class
    print(">>>>> PROTOCOL >>>>>",abf.protocomment)
    runFunction="proto_unknown"
    if "proto_"+abf.protocomment in globals():
        runFunction="proto_"+abf.protocomment
    abf.log.debug("running %s()"%(runFunction))
    plt.close('all') # get ready
    globals()[runFunction](abf) # run that function
    try:
        globals()[runFunction](abf) # run that function
    except:
        abf.log.error("EXCEPTION DURING PROTOCOL FUNCTION")
        abf.log.error(sys.exc_info()[0])
        return "ERROR"
    plt.close('all') # clean up
    return "SUCCESS"
def analyze ( fname = False , save = True , show = None ) : if fname and os . path . exists ( fname . replace ( ".abf" , ".rst" ) ) : print ( "SKIPPING DUE TO RST FILE" ) return swhlab . plotting . core . IMAGE_SAVE = save if show is None : if cm . isIpython ( ) : swhlab . plotting . core . IMAGE_SHOW = True else : swhlab . plotting . core . IMAGE_SHOW = False #swhlab.plotting.core.IMAGE_SHOW=show abf = ABF ( fname ) # ensure it's a class print ( ">>>>> PROTOCOL >>>>>" , abf . protocomment ) runFunction = "proto_unknown" if "proto_" + abf . protocomment in globals ( ) : runFunction = "proto_" + abf . protocomment abf . log . debug ( "running %s()" % ( runFunction ) ) plt . close ( 'all' ) # get ready globals ( ) [ runFunction ] ( abf ) # run that function try : globals ( ) [ runFunction ] ( abf ) # run that function except : abf . log . error ( "EXCEPTION DURING PROTOCOL FUNCTION" ) abf . log . error ( sys . exc_info ( ) [ 0 ] ) return "ERROR" plt . close ( 'all' ) # clean up return "SUCCESS"
given a filename or ABF object, try to analyze it.
given a filename or ABF object try to analyze it .