def load_v4_tools():
    """ Load Gromacs 4.x tools automatically using some heuristic.

    Tries to load tools (1) in configured tool groups (2) and fails back  to
    automatic detection from ``GMXBIN`` (3) then to a prefilled list.

    Also load any extra tool configured in ``~/.gromacswrapper.cfg``

    :return: dict mapping tool names to GromacsCommand classes
    """
    logger.debug("Loading v4 tools...")

    names = config.get_tool_names()

    if len(names) == 0 and 'GMXBIN' in os.environ:
        names = find_executables(os.environ['GMXBIN'])

    if len(names) == 0 or len(names) > len(V4TOOLS) * 4:
        names = list(V4TOOLS)

    names.extend(config.get_extra_tool_names())

    tools = {}
    for name in names:
        fancy = make_valid_identifier(name)
        tools[fancy] = tool_factory(fancy, name, None)

    if not tools:
        errmsg = "Failed to load v4 tools"
        logger.debug(errmsg)
        raise GromacsToolLoadingError(errmsg)
    logger.debug("Loaded {0} v4 tools successfully!".format(len(tools)))
    return tools
def load_v4_tools():
    """ Load Gromacs 4.x tools automatically using some heuristic.

    Tries to load tools (1) in configured tool groups (2) and fails back  to
    automatic detection from ``GMXBIN`` (3) then to a prefilled list.

    Also load any extra tool configured in ``~/.gromacswrapper.cfg``

    :return: dict mapping tool names to GromacsCommand classes
    """
    logger.debug("Loading v4 tools...")

    names = config.get_tool_names()

    if len(names) == 0 and 'GMXBIN' in os.environ:
        names = find_executables(os.environ['GMXBIN'])

    if len(names) == 0 or len(names) > len(V4TOOLS) * 4:
        names = list(V4TOOLS)

    names.extend(config.get_extra_tool_names())

    tools = {}
    for name in names:
        fancy = make_valid_identifier(name)
        tools[fancy] = tool_factory(fancy, name, None)

    if not tools:
        errmsg = "Failed to load v4 tools"
        logger.debug(errmsg)
        raise GromacsToolLoadingError(errmsg)
    logger.debug("Loaded {0} v4 tools successfully!".format(len(tools)))
    return tools
def load_v4_tools ( ) : logger . debug ( "Loading v4 tools..." ) names = config . get_tool_names ( ) if len ( names ) == 0 and 'GMXBIN' in os . environ : names = find_executables ( os . environ [ 'GMXBIN' ] ) if len ( names ) == 0 or len ( names ) > len ( V4TOOLS ) * 4 : names = list ( V4TOOLS ) names . extend ( config . get_extra_tool_names ( ) ) tools = { } for name in names : fancy = make_valid_identifier ( name ) tools [ fancy ] = tool_factory ( fancy , name , None ) if not tools : errmsg = "Failed to load v4 tools" logger . debug ( errmsg ) raise GromacsToolLoadingError ( errmsg ) logger . debug ( "Loaded {0} v4 tools successfully!" . format ( len ( tools ) ) ) return tools
Load Gromacs 4.x tools automatically using some heuristic.

    Tries to load tools (1) in configured tool groups (2) and fails back  to
    automatic detection from ``GMXBIN`` (3) then to a prefilled list.

    Also load any extra tool configured in ``~/.gromacswrapper.cfg``

    :return: dict mapping tool names to GromacsCommand classes
Load Gromacs 4 . x tools automatically using some heuristic .