cobra/core/reaction.py
def flux(self):
        """
        The flux value in the most recent solution.

        Flux is the primal value of the corresponding variable in the model.

        Warnings
        --------
        * Accessing reaction fluxes through a `Solution` object is the safer,
          preferred, and only guaranteed to be correct way. You can see how to
          do so easily in the examples.
        * Reaction flux is retrieved from the currently defined
          `self._model.solver`. The solver status is checked but there are no
          guarantees that the current solver state is the one you are looking
          for.
        * If you modify the underlying model after an optimization, you will
          retrieve the old optimization values.

        Raises
        ------
        RuntimeError
            If the underlying model was never optimized beforehand or the
            reaction is not part of a model.
        OptimizationError
            If the solver status is anything other than 'optimal'.
        AssertionError
            If the flux value is not within the bounds.

        Examples
        --------
        >>> import cobra.test
        >>> model = cobra.test.create_test_model("textbook")
        >>> solution = model.optimize()
        >>> model.reactions.PFK.flux
        7.477381962160283
        >>> solution.fluxes.PFK
        7.4773819621602833
        """
        try:
            check_solver_status(self._model.solver.status)
            return self.forward_variable.primal - self.reverse_variable.primal
        except AttributeError:
            raise RuntimeError(
                "reaction '{}' is not part of a model".format(self.id))
        # Due to below all-catch, which sucks, need to reraise these.
        except (RuntimeError, OptimizationError) as err:
            raise_with_traceback(err)
        # Would love to catch CplexSolverError and GurobiError here.
        except Exception as err:
            raise_from(OptimizationError(
                "Likely no solution exists. Original solver message: {}."
                "".format(str(err))), err)
def flux(self):
        """
        The flux value in the most recent solution.

        Flux is the primal value of the corresponding variable in the model.

        Warnings
        --------
        * Accessing reaction fluxes through a `Solution` object is the safer,
          preferred, and only guaranteed to be correct way. You can see how to
          do so easily in the examples.
        * Reaction flux is retrieved from the currently defined
          `self._model.solver`. The solver status is checked but there are no
          guarantees that the current solver state is the one you are looking
          for.
        * If you modify the underlying model after an optimization, you will
          retrieve the old optimization values.

        Raises
        ------
        RuntimeError
            If the underlying model was never optimized beforehand or the
            reaction is not part of a model.
        OptimizationError
            If the solver status is anything other than 'optimal'.
        AssertionError
            If the flux value is not within the bounds.

        Examples
        --------
        >>> import cobra.test
        >>> model = cobra.test.create_test_model("textbook")
        >>> solution = model.optimize()
        >>> model.reactions.PFK.flux
        7.477381962160283
        >>> solution.fluxes.PFK
        7.4773819621602833
        """
        try:
            check_solver_status(self._model.solver.status)
            return self.forward_variable.primal - self.reverse_variable.primal
        except AttributeError:
            raise RuntimeError(
                "reaction '{}' is not part of a model".format(self.id))
        # Due to below all-catch, which sucks, need to reraise these.
        except (RuntimeError, OptimizationError) as err:
            raise_with_traceback(err)
        # Would love to catch CplexSolverError and GurobiError here.
        except Exception as err:
            raise_from(OptimizationError(
                "Likely no solution exists. Original solver message: {}."
                "".format(str(err))), err)
def flux ( self ) : try : check_solver_status ( self . _model . solver . status ) return self . forward_variable . primal - self . reverse_variable . primal except AttributeError : raise RuntimeError ( "reaction '{}' is not part of a model" . format ( self . id ) ) # Due to below all-catch, which sucks, need to reraise these. except ( RuntimeError , OptimizationError ) as err : raise_with_traceback ( err ) # Would love to catch CplexSolverError and GurobiError here. except Exception as err : raise_from ( OptimizationError ( "Likely no solution exists. Original solver message: {}." "" . format ( str ( err ) ) ) , err )
The flux value in the most recent solution.

        Flux is the primal value of the corresponding variable in the model.

        Warnings
        --------
        * Accessing reaction fluxes through a `Solution` object is the safer,
          preferred, and only guaranteed to be correct way. You can see how to
          do so easily in the examples.
        * Reaction flux is retrieved from the currently defined
          `self._model.solver`. The solver status is checked but there are no
          guarantees that the current solver state is the one you are looking
          for.
        * If you modify the underlying model after an optimization, you will
          retrieve the old optimization values.

        Raises
        ------
        RuntimeError
            If the underlying model was never optimized beforehand or the
            reaction is not part of a model.
        OptimizationError
            If the solver status is anything other than 'optimal'.
        AssertionError
            If the flux value is not within the bounds.

        Examples
        --------
        >>> import cobra.test
        >>> model = cobra.test.create_test_model("textbook")
        >>> solution = model.optimize()
        >>> model.reactions.PFK.flux
        7.477381962160283
        >>> solution.fluxes.PFK
        7.4773819621602833
The flux value in the most recent solution .