pyfastaq/intervals.py
def intersection(l1, l2):
    '''Returns intersection of two lists.  Assumes the lists are sorted by start positions'''
    if len(l1) == 0 or len(l2) == 0:
        return []

    out = []
    l2_pos = 0

    for l in l1:
        while l2_pos < len(l2) and l2[l2_pos].end < l.start:
            l2_pos += 1

        if l2_pos == len(l2):
            break

        while l2_pos < len(l2) and l.intersects(l2[l2_pos]):
            out.append(l.intersection(l2[l2_pos]))
            l2_pos += 1

        l2_pos = max(0, l2_pos - 1)

    return out
def intersection(l1, l2):
    '''Returns intersection of two lists.  Assumes the lists are sorted by start positions'''
    if len(l1) == 0 or len(l2) == 0:
        return []

    out = []
    l2_pos = 0

    for l in l1:
        while l2_pos < len(l2) and l2[l2_pos].end < l.start:
            l2_pos += 1

        if l2_pos == len(l2):
            break

        while l2_pos < len(l2) and l.intersects(l2[l2_pos]):
            out.append(l.intersection(l2[l2_pos]))
            l2_pos += 1

        l2_pos = max(0, l2_pos - 1)

    return out
def intersection ( l1 , l2 ) : if len ( l1 ) == 0 or len ( l2 ) == 0 : return [ ] out = [ ] l2_pos = 0 for l in l1 : while l2_pos < len ( l2 ) and l2 [ l2_pos ] . end < l . start : l2_pos += 1 if l2_pos == len ( l2 ) : break while l2_pos < len ( l2 ) and l . intersects ( l2 [ l2_pos ] ) : out . append ( l . intersection ( l2 [ l2_pos ] ) ) l2_pos += 1 l2_pos = max ( 0 , l2_pos - 1 ) return out
Returns intersection of two lists.  Assumes the lists are sorted by start positions
Returns intersection of two lists . Assumes the lists are sorted by start positions