lancet/launch.py
def _qsub_block(self, output_dir, error_dir, tid_specs):
        """
        This method handles static argument specifiers and cases where
        the dynamic specifiers cannot be queued before the arguments
        are known.
        """
        processes = []
        job_names = []

        for (tid, spec) in tid_specs:
            job_name = "%s_%s_tid_%d" % (self.batch_name, self.job_timestamp, tid)
            job_names.append(job_name)
            cmd_args = self.command(
                    self.command._formatter(spec),
                    tid, self._launchinfo)

            popen_args = self._qsub_args([("-e",error_dir), ('-N',job_name), ("-o",output_dir)],
                                        cmd_args)
            p = subprocess.Popen(popen_args, stdout=subprocess.PIPE)
            (stdout, stderr) = p.communicate()

            self.debug(stdout)
            if p.poll() != 0:
                raise EnvironmentError("qsub command exit with code: %d" % p.poll())

            processes.append(p)

        self.message("Invoked qsub for %d commands" % len(processes))
        if (self.reduction_fn is not None) or self.dynamic:
            self._qsub_collate_and_launch(output_dir, error_dir, job_names)
def _qsub_block(self, output_dir, error_dir, tid_specs):
        """
        This method handles static argument specifiers and cases where
        the dynamic specifiers cannot be queued before the arguments
        are known.
        """
        processes = []
        job_names = []

        for (tid, spec) in tid_specs:
            job_name = "%s_%s_tid_%d" % (self.batch_name, self.job_timestamp, tid)
            job_names.append(job_name)
            cmd_args = self.command(
                    self.command._formatter(spec),
                    tid, self._launchinfo)

            popen_args = self._qsub_args([("-e",error_dir), ('-N',job_name), ("-o",output_dir)],
                                        cmd_args)
            p = subprocess.Popen(popen_args, stdout=subprocess.PIPE)
            (stdout, stderr) = p.communicate()

            self.debug(stdout)
            if p.poll() != 0:
                raise EnvironmentError("qsub command exit with code: %d" % p.poll())

            processes.append(p)

        self.message("Invoked qsub for %d commands" % len(processes))
        if (self.reduction_fn is not None) or self.dynamic:
            self._qsub_collate_and_launch(output_dir, error_dir, job_names)
def _qsub_block ( self , output_dir , error_dir , tid_specs ) : processes = [ ] job_names = [ ] for ( tid , spec ) in tid_specs : job_name = "%s_%s_tid_%d" % ( self . batch_name , self . job_timestamp , tid ) job_names . append ( job_name ) cmd_args = self . command ( self . command . _formatter ( spec ) , tid , self . _launchinfo ) popen_args = self . _qsub_args ( [ ( "-e" , error_dir ) , ( '-N' , job_name ) , ( "-o" , output_dir ) ] , cmd_args ) p = subprocess . Popen ( popen_args , stdout = subprocess . PIPE ) ( stdout , stderr ) = p . communicate ( ) self . debug ( stdout ) if p . poll ( ) != 0 : raise EnvironmentError ( "qsub command exit with code: %d" % p . poll ( ) ) processes . append ( p ) self . message ( "Invoked qsub for %d commands" % len ( processes ) ) if ( self . reduction_fn is not None ) or self . dynamic : self . _qsub_collate_and_launch ( output_dir , error_dir , job_names )
This method handles static argument specifiers and cases where
        the dynamic specifiers cannot be queued before the arguments
        are known.
This method handles static argument specifiers and cases where the dynamic specifiers cannot be queued before the arguments are known .