tensorlayer/cost.py
def dice_coe(output, target, loss_type='jaccard', axis=(1, 2, 3), smooth=1e-5):
    """Soft dice (Sørensen or Jaccard) coefficient for comparing the similarity
    of two batch of data, usually be used for binary image segmentation
    i.e. labels are binary. The coefficient between 0 to 1, 1 means totally match.

    Parameters
    -----------
    output : Tensor
        A distribution with shape: [batch_size, ....], (any dimensions).
    target : Tensor
        The target distribution, format the same with `output`.
    loss_type : str
        ``jaccard`` or ``sorensen``, default is ``jaccard``.
    axis : tuple of int
        All dimensions are reduced, default ``[1,2,3]``.
    smooth : float
        This small value will be added to the numerator and denominator.
            - If both output and target are empty, it makes sure dice is 1.
            - If either output or target are empty (all pixels are background), dice = ```smooth/(small_value + smooth)``, then if smooth is very small, dice close to 0 (even the image values lower than the threshold), so in this case, higher smooth can have a higher dice.

    Examples
    ---------
    >>> outputs = tl.act.pixel_wise_softmax(network.outputs)
    >>> dice_loss = 1 - tl.cost.dice_coe(outputs, y_)

    References
    -----------
    - `Wiki-Dice <https://en.wikipedia.org/wiki/Sørensen–Dice_coefficient>`__

    """
    inse = tf.reduce_sum(output * target, axis=axis)
    if loss_type == 'jaccard':
        l = tf.reduce_sum(output * output, axis=axis)
        r = tf.reduce_sum(target * target, axis=axis)
    elif loss_type == 'sorensen':
        l = tf.reduce_sum(output, axis=axis)
        r = tf.reduce_sum(target, axis=axis)
    else:
        raise Exception("Unknow loss_type")
    # old axis=[0,1,2,3]
    # dice = 2 * (inse) / (l + r)
    # epsilon = 1e-5
    # dice = tf.clip_by_value(dice, 0, 1.0-epsilon) # if all empty, dice = 1
    # new haodong
    dice = (2. * inse + smooth) / (l + r + smooth)
    ##
    dice = tf.reduce_mean(dice, name='dice_coe')
    return dice
def dice_coe(output, target, loss_type='jaccard', axis=(1, 2, 3), smooth=1e-5):
    """Soft dice (Sørensen or Jaccard) coefficient for comparing the similarity
    of two batch of data, usually be used for binary image segmentation
    i.e. labels are binary. The coefficient between 0 to 1, 1 means totally match.

    Parameters
    -----------
    output : Tensor
        A distribution with shape: [batch_size, ....], (any dimensions).
    target : Tensor
        The target distribution, format the same with `output`.
    loss_type : str
        ``jaccard`` or ``sorensen``, default is ``jaccard``.
    axis : tuple of int
        All dimensions are reduced, default ``[1,2,3]``.
    smooth : float
        This small value will be added to the numerator and denominator.
            - If both output and target are empty, it makes sure dice is 1.
            - If either output or target are empty (all pixels are background), dice = ```smooth/(small_value + smooth)``, then if smooth is very small, dice close to 0 (even the image values lower than the threshold), so in this case, higher smooth can have a higher dice.

    Examples
    ---------
    >>> outputs = tl.act.pixel_wise_softmax(network.outputs)
    >>> dice_loss = 1 - tl.cost.dice_coe(outputs, y_)

    References
    -----------
    - `Wiki-Dice <https://en.wikipedia.org/wiki/Sørensen–Dice_coefficient>`__

    """
    inse = tf.reduce_sum(output * target, axis=axis)
    if loss_type == 'jaccard':
        l = tf.reduce_sum(output * output, axis=axis)
        r = tf.reduce_sum(target * target, axis=axis)
    elif loss_type == 'sorensen':
        l = tf.reduce_sum(output, axis=axis)
        r = tf.reduce_sum(target, axis=axis)
    else:
        raise Exception("Unknow loss_type")
    # old axis=[0,1,2,3]
    # dice = 2 * (inse) / (l + r)
    # epsilon = 1e-5
    # dice = tf.clip_by_value(dice, 0, 1.0-epsilon) # if all empty, dice = 1
    # new haodong
    dice = (2. * inse + smooth) / (l + r + smooth)
    ##
    dice = tf.reduce_mean(dice, name='dice_coe')
    return dice
def dice_coe ( output , target , loss_type = 'jaccard' , axis = ( 1 , 2 , 3 ) , smooth = 1e-5 ) : inse = tf . reduce_sum ( output * target , axis = axis ) if loss_type == 'jaccard' : l = tf . reduce_sum ( output * output , axis = axis ) r = tf . reduce_sum ( target * target , axis = axis ) elif loss_type == 'sorensen' : l = tf . reduce_sum ( output , axis = axis ) r = tf . reduce_sum ( target , axis = axis ) else : raise Exception ( "Unknow loss_type" ) # old axis=[0,1,2,3] # dice = 2 * (inse) / (l + r) # epsilon = 1e-5 # dice = tf.clip_by_value(dice, 0, 1.0-epsilon) # if all empty, dice = 1 # new haodong dice = ( 2. * inse + smooth ) / ( l + r + smooth ) ## dice = tf . reduce_mean ( dice , name = 'dice_coe' ) return dice
Soft dice (Sørensen or Jaccard) coefficient for comparing the similarity
    of two batch of data, usually be used for binary image segmentation
    i.e. labels are binary. The coefficient between 0 to 1, 1 means totally match.

    Parameters
    -----------
    output : Tensor
        A distribution with shape: [batch_size, ....], (any dimensions).
    target : Tensor
        The target distribution, format the same with `output`.
    loss_type : str
        ``jaccard`` or ``sorensen``, default is ``jaccard``.
    axis : tuple of int
        All dimensions are reduced, default ``[1,2,3]``.
    smooth : float
        This small value will be added to the numerator and denominator.
            - If both output and target are empty, it makes sure dice is 1.
            - If either output or target are empty (all pixels are background), dice = ```smooth/(small_value + smooth)``, then if smooth is very small, dice close to 0 (even the image values lower than the threshold), so in this case, higher smooth can have a higher dice.

    Examples
    ---------
    >>> outputs = tl.act.pixel_wise_softmax(network.outputs)
    >>> dice_loss = 1 - tl.cost.dice_coe(outputs, y_)

    References
    -----------
    - `Wiki-Dice <https://en.wikipedia.org/wiki/Sørensen–Dice_coefficient>`__
Soft dice ( Sørensen or Jaccard ) coefficient for comparing the similarity of two batch of data usually be used for binary image segmentation i . e . labels are binary . The coefficient between 0 to 1 1 means totally match .