ipyrad/assemble/cluster_within.py
def data_cleanup(data):
    """ cleanup / statswriting function for Assembly obj """
    data.stats_dfs.s3 = data._build_stat("s3")
    data.stats_files.s3 = os.path.join(data.dirs.clusts, "s3_cluster_stats.txt")
    with io.open(data.stats_files.s3, 'w') as outfile:
        data.stats_dfs.s3.to_string(
            buf=outfile,
            formatters={
                'merged_pairs':'{:.0f}'.format,
                'clusters_total':'{:.0f}'.format,
                'clusters_hidepth':'{:.0f}'.format,
                'filtered_bad_align':'{:.0f}'.format,
                'avg_depth_stat':'{:.2f}'.format,
                'avg_depth_mj':'{:.2f}'.format,
                'avg_depth_total':'{:.2f}'.format,
                'sd_depth_stat':'{:.2f}'.format,
                'sd_depth_mj':'{:.2f}'.format,
                'sd_depth_total':'{:.2f}'.format
            })
def data_cleanup(data):
    """ cleanup / statswriting function for Assembly obj """
    data.stats_dfs.s3 = data._build_stat("s3")
    data.stats_files.s3 = os.path.join(data.dirs.clusts, "s3_cluster_stats.txt")
    with io.open(data.stats_files.s3, 'w') as outfile:
        data.stats_dfs.s3.to_string(
            buf=outfile,
            formatters={
                'merged_pairs':'{:.0f}'.format,
                'clusters_total':'{:.0f}'.format,
                'clusters_hidepth':'{:.0f}'.format,
                'filtered_bad_align':'{:.0f}'.format,
                'avg_depth_stat':'{:.2f}'.format,
                'avg_depth_mj':'{:.2f}'.format,
                'avg_depth_total':'{:.2f}'.format,
                'sd_depth_stat':'{:.2f}'.format,
                'sd_depth_mj':'{:.2f}'.format,
                'sd_depth_total':'{:.2f}'.format
            })
def data_cleanup ( data ) : data . stats_dfs . s3 = data . _build_stat ( "s3" ) data . stats_files . s3 = os . path . join ( data . dirs . clusts , "s3_cluster_stats.txt" ) with io . open ( data . stats_files . s3 , 'w' ) as outfile : data . stats_dfs . s3 . to_string ( buf = outfile , formatters = { 'merged_pairs' : '{:.0f}' . format , 'clusters_total' : '{:.0f}' . format , 'clusters_hidepth' : '{:.0f}' . format , 'filtered_bad_align' : '{:.0f}' . format , 'avg_depth_stat' : '{:.2f}' . format , 'avg_depth_mj' : '{:.2f}' . format , 'avg_depth_total' : '{:.2f}' . format , 'sd_depth_stat' : '{:.2f}' . format , 'sd_depth_mj' : '{:.2f}' . format , 'sd_depth_total' : '{:.2f}' . format } )
cleanup / statswriting function for Assembly obj
cleanup / statswriting function for Assembly obj