ipyrad/file_conversion/loci2phynex.py
def update(assembly, idict, count):
    """ updates dictionary with the next .5M reads from the super long string 
    phylip file. Makes for faster reading. """

    data = iter(open(os.path.join(assembly.dirs.outfiles,
                     assembly.name+".phy"), 'r'))

    ntax, nchar = data.next().strip().split()

    ## read in max N bp at a time                                                                            
    for line in data:
        tax, seq = line.strip().split()
        idict[tax] = idict[tax][100000:]
        idict[tax] += seq[count:count+100000]
    del line

    return idict
def update(assembly, idict, count):
    """ updates dictionary with the next .5M reads from the super long string 
    phylip file. Makes for faster reading. """

    data = iter(open(os.path.join(assembly.dirs.outfiles,
                     assembly.name+".phy"), 'r'))

    ntax, nchar = data.next().strip().split()

    ## read in max N bp at a time                                                                            
    for line in data:
        tax, seq = line.strip().split()
        idict[tax] = idict[tax][100000:]
        idict[tax] += seq[count:count+100000]
    del line

    return idict
def update ( assembly , idict , count ) : data = iter ( open ( os . path . join ( assembly . dirs . outfiles , assembly . name + ".phy" ) , 'r' ) ) ntax , nchar = data . next ( ) . strip ( ) . split ( ) ## read in max N bp at a time                                                                             for line in data : tax , seq = line . strip ( ) . split ( ) idict [ tax ] = idict [ tax ] [ 100000 : ] idict [ tax ] += seq [ count : count + 100000 ] del line return idict
updates dictionary with the next .5M reads from the super long string 
    phylip file. Makes for faster reading.
updates dictionary with the next . 5M reads from the super long string phylip file . Makes for faster reading .