ipyrad/analysis/tetrad.py
def _save(self):
        """ save a JSON file representation of Tetrad Class for checkpoint"""

        ## save each attribute as dict
        fulldict = copy.deepcopy(self.__dict__)
        for i, j in fulldict.items():
            if isinstance(j, Params):
                fulldict[i] = j.__dict__
        fulldumps = json.dumps(fulldict,
                               sort_keys=False, 
                               indent=4, 
                               separators=(",", ":"),
                               )

        ## save to file, make dir if it wasn't made earlier
        assemblypath = os.path.join(self.dirs, self.name+".tet.json")
        if not os.path.exists(self.dirs):
            os.mkdir(self.dirs)
    
        ## protect save from interruption
        done = 0
        while not done:
            try:
                with open(assemblypath, 'w') as jout:
                    jout.write(fulldumps)
                done = 1
            except (KeyboardInterrupt, SystemExit): 
                print('.')
                continue
def _save(self):
        """ save a JSON file representation of Tetrad Class for checkpoint"""

        ## save each attribute as dict
        fulldict = copy.deepcopy(self.__dict__)
        for i, j in fulldict.items():
            if isinstance(j, Params):
                fulldict[i] = j.__dict__
        fulldumps = json.dumps(fulldict,
                               sort_keys=False, 
                               indent=4, 
                               separators=(",", ":"),
                               )

        ## save to file, make dir if it wasn't made earlier
        assemblypath = os.path.join(self.dirs, self.name+".tet.json")
        if not os.path.exists(self.dirs):
            os.mkdir(self.dirs)
    
        ## protect save from interruption
        done = 0
        while not done:
            try:
                with open(assemblypath, 'w') as jout:
                    jout.write(fulldumps)
                done = 1
            except (KeyboardInterrupt, SystemExit): 
                print('.')
                continue
def _save ( self ) : ## save each attribute as dict fulldict = copy . deepcopy ( self . __dict__ ) for i , j in fulldict . items ( ) : if isinstance ( j , Params ) : fulldict [ i ] = j . __dict__ fulldumps = json . dumps ( fulldict , sort_keys = False , indent = 4 , separators = ( "," , ":" ) , ) ## save to file, make dir if it wasn't made earlier assemblypath = os . path . join ( self . dirs , self . name + ".tet.json" ) if not os . path . exists ( self . dirs ) : os . mkdir ( self . dirs ) ## protect save from interruption done = 0 while not done : try : with open ( assemblypath , 'w' ) as jout : jout . write ( fulldumps ) done = 1 except ( KeyboardInterrupt , SystemExit ) : print ( '.' ) continue
save a JSON file representation of Tetrad Class for checkpoint
save a JSON file representation of Tetrad Class for checkpoint