swhlab/indexing/indexing.py
def html_single_basic(self,abfID,launch=False,overwrite=False):
        """
        generate a generic flat file html for an ABF parent. You could give
        this a single ABF ID, its parent ID, or a list of ABF IDs.
        If a child ABF is given, the parent will automatically be used.
        """
        if type(abfID) is str:
            abfID=[abfID]
        for thisABFid in cm.abfSort(abfID):
            parentID=cm.parent(self.groups,thisABFid)
            saveAs=os.path.abspath("%s/%s_basic.html"%(self.folder2,parentID))
            if overwrite is False and os.path.basename(saveAs) in self.files2:
                continue
            filesByType=cm.filesByType(self.groupFiles[parentID])
            html=""
            html+='<div style="background-color: #DDDDDD;">'
            html+='<span class="title">summary of data from: %s</span></br>'%parentID
            html+='<code>%s</code>'%os.path.abspath(self.folder1+"/"+parentID+".abf")
            html+='</div>'
            catOrder=["experiment","plot","tif","other"]
            categories=cm.list_order_by(filesByType.keys(),catOrder)
            for category in [x for x in categories if len(filesByType[x])]:
                if category=='experiment':
                    html+="<h3>Experimental Data:</h3>"
                elif category=='plot':
                    html+="<h3>Intrinsic Properties:</h3>"
                elif category=='tif':
                    html+="<h3>Micrographs:</h3>"
                elif category=='other':
                    html+="<h3>Additional Files:</h3>"
                else:
                    html+="<h3>????:</h3>"
                #html+="<hr>"
                #html+='<br>'*3
                for fname in filesByType[category]:
                    html+=self.htmlFor(fname)
                html+='<br>'*3
            print("creating",saveAs,'...')
            style.save(html,saveAs,launch=launch)
def html_single_basic(self,abfID,launch=False,overwrite=False):
        """
        generate a generic flat file html for an ABF parent. You could give
        this a single ABF ID, its parent ID, or a list of ABF IDs.
        If a child ABF is given, the parent will automatically be used.
        """
        if type(abfID) is str:
            abfID=[abfID]
        for thisABFid in cm.abfSort(abfID):
            parentID=cm.parent(self.groups,thisABFid)
            saveAs=os.path.abspath("%s/%s_basic.html"%(self.folder2,parentID))
            if overwrite is False and os.path.basename(saveAs) in self.files2:
                continue
            filesByType=cm.filesByType(self.groupFiles[parentID])
            html=""
            html+='<div style="background-color: #DDDDDD;">'
            html+='<span class="title">summary of data from: %s</span></br>'%parentID
            html+='<code>%s</code>'%os.path.abspath(self.folder1+"/"+parentID+".abf")
            html+='</div>'
            catOrder=["experiment","plot","tif","other"]
            categories=cm.list_order_by(filesByType.keys(),catOrder)
            for category in [x for x in categories if len(filesByType[x])]:
                if category=='experiment':
                    html+="<h3>Experimental Data:</h3>"
                elif category=='plot':
                    html+="<h3>Intrinsic Properties:</h3>"
                elif category=='tif':
                    html+="<h3>Micrographs:</h3>"
                elif category=='other':
                    html+="<h3>Additional Files:</h3>"
                else:
                    html+="<h3>????:</h3>"
                #html+="<hr>"
                #html+='<br>'*3
                for fname in filesByType[category]:
                    html+=self.htmlFor(fname)
                html+='<br>'*3
            print("creating",saveAs,'...')
            style.save(html,saveAs,launch=launch)
def html_single_basic ( self , abfID , launch = False , overwrite = False ) : if type ( abfID ) is str : abfID = [ abfID ] for thisABFid in cm . abfSort ( abfID ) : parentID = cm . parent ( self . groups , thisABFid ) saveAs = os . path . abspath ( "%s/%s_basic.html" % ( self . folder2 , parentID ) ) if overwrite is False and os . path . basename ( saveAs ) in self . files2 : continue filesByType = cm . filesByType ( self . groupFiles [ parentID ] ) html = "" html += '<div style="background-color: #DDDDDD;">' html += '<span class="title">summary of data from: %s</span></br>' % parentID html += '<code>%s</code>' % os . path . abspath ( self . folder1 + "/" + parentID + ".abf" ) html += '</div>' catOrder = [ "experiment" , "plot" , "tif" , "other" ] categories = cm . list_order_by ( filesByType . keys ( ) , catOrder ) for category in [ x for x in categories if len ( filesByType [ x ] ) ] : if category == 'experiment' : html += "<h3>Experimental Data:</h3>" elif category == 'plot' : html += "<h3>Intrinsic Properties:</h3>" elif category == 'tif' : html += "<h3>Micrographs:</h3>" elif category == 'other' : html += "<h3>Additional Files:</h3>" else : html += "<h3>????:</h3>" #html+="<hr>" #html+='<br>'*3 for fname in filesByType [ category ] : html += self . htmlFor ( fname ) html += '<br>' * 3 print ( "creating" , saveAs , '...' ) style . save ( html , saveAs , launch = launch )
generate a generic flat file html for an ABF parent. You could give
        this a single ABF ID, its parent ID, or a list of ABF IDs.
        If a child ABF is given, the parent will automatically be used.
generate a generic flat file html for an ABF parent . You could give this a single ABF ID its parent ID or a list of ABF IDs . If a child ABF is given the parent will automatically be used .