lancet/launch.py
def collate_and_launch(self):
        """
        Method that collates the previous jobs and launches the next
        block of concurrent jobs when using DynamicArgs. This method
        is invoked on initial launch and then subsequently via a
        commandline call (to Python via qsub) to collate the
        previously run jobs and launch the next block of jobs.
        """

        try:   specs = next(self.spec_iter)
        except StopIteration:
            self.qdel_batch()
            if self.reduction_fn is not None:
                self.reduction_fn(self._spec_log, self.root_directory)
            self._record_info()
            return

        tid_specs = [(self.last_tid + i, spec) for (i,spec) in enumerate(specs)]
        self.last_tid += len(specs)
        self._append_log(tid_specs)

        # Updating the argument specifier
        if self.dynamic:
            self.args.update(self.last_tids, self._launchinfo)
        self.last_tids = [tid for (tid,_) in tid_specs]

        output_dir = self.qsub_flag_options['-o']
        error_dir = self.qsub_flag_options['-e']
        self._qsub_block(output_dir, error_dir, tid_specs)

        # Pickle launcher before exit if necessary.
        if self.dynamic or (self.reduction_fn is not None):
            pickle_path = os.path.join(self.root_directory, 'qlauncher.pkl')
            pickle.dump(self, open(pickle_path,'wb'), protocol=2)
def collate_and_launch(self):
        """
        Method that collates the previous jobs and launches the next
        block of concurrent jobs when using DynamicArgs. This method
        is invoked on initial launch and then subsequently via a
        commandline call (to Python via qsub) to collate the
        previously run jobs and launch the next block of jobs.
        """

        try:   specs = next(self.spec_iter)
        except StopIteration:
            self.qdel_batch()
            if self.reduction_fn is not None:
                self.reduction_fn(self._spec_log, self.root_directory)
            self._record_info()
            return

        tid_specs = [(self.last_tid + i, spec) for (i,spec) in enumerate(specs)]
        self.last_tid += len(specs)
        self._append_log(tid_specs)

        # Updating the argument specifier
        if self.dynamic:
            self.args.update(self.last_tids, self._launchinfo)
        self.last_tids = [tid for (tid,_) in tid_specs]

        output_dir = self.qsub_flag_options['-o']
        error_dir = self.qsub_flag_options['-e']
        self._qsub_block(output_dir, error_dir, tid_specs)

        # Pickle launcher before exit if necessary.
        if self.dynamic or (self.reduction_fn is not None):
            pickle_path = os.path.join(self.root_directory, 'qlauncher.pkl')
            pickle.dump(self, open(pickle_path,'wb'), protocol=2)
def collate_and_launch ( self ) : try : specs = next ( self . spec_iter ) except StopIteration : self . qdel_batch ( ) if self . reduction_fn is not None : self . reduction_fn ( self . _spec_log , self . root_directory ) self . _record_info ( ) return tid_specs = [ ( self . last_tid + i , spec ) for ( i , spec ) in enumerate ( specs ) ] self . last_tid += len ( specs ) self . _append_log ( tid_specs ) # Updating the argument specifier if self . dynamic : self . args . update ( self . last_tids , self . _launchinfo ) self . last_tids = [ tid for ( tid , _ ) in tid_specs ] output_dir = self . qsub_flag_options [ '-o' ] error_dir = self . qsub_flag_options [ '-e' ] self . _qsub_block ( output_dir , error_dir , tid_specs ) # Pickle launcher before exit if necessary. if self . dynamic or ( self . reduction_fn is not None ) : pickle_path = os . path . join ( self . root_directory , 'qlauncher.pkl' ) pickle . dump ( self , open ( pickle_path , 'wb' ) , protocol = 2 )
Method that collates the previous jobs and launches the next
        block of concurrent jobs when using DynamicArgs. This method
        is invoked on initial launch and then subsequently via a
        commandline call (to Python via qsub) to collate the
        previously run jobs and launch the next block of jobs.
Method that collates the previous jobs and launches the next block of concurrent jobs when using DynamicArgs . This method is invoked on initial launch and then subsequently via a commandline call ( to Python via qsub ) to collate the previously run jobs and launch the next block of jobs .