adds local embeddings and huggingface inference as defaults , adds tests , improves precommit and ci cd46aca unverified Joseph Pollack commited on Nov 28, 2025
Merge branch 'dev' into feature/iterative-deep-research-workflows e6c2142 unverified Tonic commited on Nov 28, 2025
adds the initial iterative and deep research workflows 731a241 unverified Joseph Pollack commited on Nov 28, 2025
feat: add hierarchical orchestration with web search (integrates PR #44) (#46) 20f762e unverified VibecoderMcSwaggins EmployeeNo427 commited on Nov 27, 2025
fix(magentic): defensive text extraction & cleanup biorxiv refs 3bfd42c VibecoderMcSwaggins commited on Nov 27, 2025
refactor(tools): replace BioRxiv with Europe PMC (Phase 01) 2f8ae1f VibecoderMcSwaggins commited on Nov 27, 2025
docs: add P0 blockers documentation for Magentic mode implementation c2f7da2 VibecoderMcSwaggins commited on Nov 27, 2025
feat: implement Magentic ChatAgent pattern with semantic state management 645a051 VibecoderMcSwaggins commited on Nov 27, 2025
feat: implement phase 13 modal pipeline integration 7cc8b69 VibecoderMcSwaggins commited on Nov 26, 2025
refactor: address CodeRabbit review feedback for Mario integration cbd94a4 VibecoderMcSwaggins commited on Nov 26, 2025
feat: Integrate Mario's Modal code execution + LlamaIndex RAG 3aa91e9 VibecoderMcSwaggins Mario commited on Nov 26, 2025
feat: Complete Phase 9 Source Cleanup (Remove WebTool) (#14) cd004e1 VibecoderMcSwaggins commited on Nov 26, 2025
fix: address all CodeRabbit Phase 8 review feedback f1e4e5b VibecoderMcSwaggins commited on Nov 25, 2025
fix: apply lazy init pattern and pydantic-ai fixes to ReportAgent (#12) 3139749 VibecoderMcSwaggins commited on Nov 25, 2025
feat(phase7): implement Hypothesis Agent for mechanistic reasoning c690006 VibecoderMcSwaggins commited on Nov 25, 2025
feat(phase6): Embeddings & Semantic Search implementation 3bacbf8 VibecoderMcSwaggins commited on Nov 25, 2025