Add new embeddings and update data processing scripts; remove MiniEncoder

Manifest.toml

@@ -0,0 +1,1499 @@
+# This file is machine-generated - editing it directly is not advised
+
+julia_version = "1.10.4"
+manifest_format = "2.0"
+project_hash = "1ce95d4f8f4617f58a3df72191590f2e35b92b89"
+
+[[deps.AbstractTrees]]
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+
+[[deps.AliasTables]]
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+
+[[deps.ArgTools]]
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+[[deps.Artifacts]]
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+
+[[deps.Base64]]
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+[[deps.BitFlags]]
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+
+    [deps.CategoricalArrays.extensions]
+    CategoricalArraysJSONExt = "JSON"
+    CategoricalArraysRecipesBaseExt = "RecipesBase"
+    CategoricalArraysSentinelArraysExt = "SentinelArrays"
+    CategoricalArraysStructTypesExt = "StructTypes"
+
+[[deps.CodeTracking]]
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+git-tree-sha1 = "c950ae0a3577aec97bfccf3381f66666bc416729"
+uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd"
+version = "1.8.1+0"

Project.toml

@@ -10,12 +10,14 @@ Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
 Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
 HTTP = "cd3eb016-35fb-5094-929b-558a96fad6f3"
 JSON3 = "0f8b85d8-7281-11e9-16c2-39a750bddbf1"
+LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 LocalRegistry = "89398ba2-070a-4b16-a995-9893c55d93cf"
 Oxygen = "df9a0d86-3283-4920-82dc-4555fc0d1d8b"
 Pandas = "eadc2687-ae89-51f9-a5d9-86b5a6373a9c"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca"
 PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
+RAGTools = "16ddad29-bbe8-45a7-857d-3d9514eb0023"
 RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b"
 Revise = "295af30f-e4ad-537b-8983-00126c2a3abe"
 Sqids = "5846b9ac-096c-425b-b363-8d1a03210e20"

data/expansive_claims_library_expanded_embed_maxi.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2176a33633563f3abcece61cf4ec6111448425119a19780380df1f8fa7e46f13
+size 2938037

scripts/UpdateHuggingFaceAPI.jl

@@ -0,0 +1,35 @@
+## Script to update the fact-check data for HuggingFace API 
+using OstreaCultura
+
+# Get the latest data to embed 
+#include("../scripts/google_fact_check_api.jl")
+include("scripts/google_fact_check_api.jl")
+
+# Latest data 
+#get_latest_fact_checks()
+fc, errors = load_fact_check_json()
+
+## Embed with MiniEncoder or MTR5-encoder 
+#fc = CSV.read("data/fact_check_latest.csv", DataFrame)
+# drop missing text 
+fc = fc[.!ismissing.(fc.text), :]
+fc_embed = mini_embed.(fc.text) # 12 minutes
+fc.Embeddings = fc_embed
+CSV.write("data/fact_check_latest_embed_mini.csv", fc)
+
+## Embed with MTR5-encoder
+fc = fc[.!ismissing.(fc.text), :]
+# Drop where text = ""
+fc = fc[fc.text .!= "", :]
+fc_embed = OstreaCultura.maxi_embed.(fc.text) # 
+fc.Embeddings = fc_embed
+CSV.write("data/fact_check_latest_embed_maxi.csv", fc)
+
+
+narrs = CSV.read("data/expansive_claims_library_expanded_embed.csv", DataFrame)
+# drop missing text 
+narrs.text = narrs.ExpandedClaim
+narrs = narrs[.!ismissing.(narrs.text), :]
+narratives_embed = OC.maxi_embed.(narrs.text) # seconds to run 
+narrs.Embeddings = narratives_embed
+CSV.write("data/expansive_claims_library_expanded_embed_maxi.csv", narrs)

server.jl

@@ -3,8 +3,8 @@ using HTTP
 import OstreaCultura as OC
 
 # Load the fasttext embeddings and the fasttext model
-const (fc_embed, fc) = OC.load_fasttext_embeddings("data/filtered_fact_check_latest_embed.csv")
-const (nar_embed, nar) = OC.load_fasttext_embeddings("data/expansive_claims_library_expanded_embed.csv")
+const (fc_embed, fc) = OC.load_fasttext_embeddings("data/fact_check_latest_embed_maxi.csv")
+const (nar_embed, nar) = OC.load_fasttext_embeddings("data/expansive_claims_library_expanded_embed_maxi.csv")
 
 @get "/greet" function(req::HTTP.Request)
     return "hello world!"

src/Embeddings.jl

@@ -53,18 +53,39 @@ function create_chunked_text(text::String; chunk_size::Int=280)
 end
 
 """
-## Embeddings of text  
+## Embeddings of text from the small encoder
+
+text = "This is a test."
+using OstreaCultura: Encoder
+embd = Encoder.get_embeddings(text)
 
 """
 function generate_embeddings(text::String)
     try
-        return MiniEncoder.get_embeddings(text)
+        return Encoder.get_embeddings(text)
     catch e
         println("Error: ", e)
         return zeros(Float32, 384)
     end
 end
 
+"""
+## Embeddings of text from the large encoder
+
+text = "This is a test."
+using OstreaCultura: Encoder
+embd = Encoder.get_embeddings_big(text)
+LinearAlgebra.normalize(embd)
+"""
+function generate_embeddings_large(text::String)
+    try
+        return Encoder.get_embeddings_big(text)
+    catch e
+        println("Error: ", e)
+        return zeros(Float32, 768)
+    end
+end
+
 """
 # This is the core function - takes in a string of any length and returns the embeddings
 
@@ -100,6 +121,12 @@ function mini_embed(text::String)
     mean(embeddings)
 end
 
+function maxi_embed(text::String)
+    chunked_text = create_chunked_text(text)
+    embeddings = generate_embeddings_large.(chunked_text)
+    mean(embeddings)
+end
+
 """
 # Get distance and classification 
 
@@ -150,7 +177,7 @@ end
 using CSV, DataFrames
 ts = CSV.read("data/truthseeker_subsample_embed.csv", DataFrame)
 ts_embed = OC.dfdat_to_matrix(ts, :Embeddings)
-fc = CSV.read("data/fact_check_latest_embed.csv", DataFrame)
+fc = CSV.read("data/fact_check_latest_embed_maxi.csv", DataFrame)
 fc_embed = OC.dfdat_to_matrix(fc, :Embeddings)
 
 OC.fast_topk(fc_embed, fc, ts.statement[1], 5)
@@ -159,7 +186,8 @@ OC.fast_topk(fc_embed, fc, ts.statement[1], 5)
 @time [OC.fast_topk(fc_embed, fc, ts.statement[x], 5) for x in 1:3000] # 63 seconds 
 """
 function fast_topk(narrative_matrix, narratives, text::String, k)
-    target_vector = mini_embed(text)
+    #target_vector = mini_embed(text)
+    target_vector = maxi_embed(text)
     inds, scores = dotproduct_topk(narrative_matrix, target_vector, k)
     if hasproperty(narratives, :Policy)
         policy = narratives.Policy[inds]

src/py_init.jl

@@ -1,14 +1,14 @@
 ## 
 DataLoader = PyNULL()
-MiniEncoder = PyNULL()
+Encoder = PyNULL()
 
 function __init__()
     # Import DataLoader.py 
     pushfirst!(pyimport("sys")."path", "src/python");
     _DataLoader = pyimport("DataLoader")
-    _MiniEncoder = pyimport("MiniEncoder")
+    _Encoder = pyimport("Encoder")
     copy!(DataLoader, _DataLoader)
-    copy!(MiniEncoder, _MiniEncoder)
+    copy!(Encoder, _Encoder)
 end
 
 

src/python/{MiniEncoder.py → Encoder.py}

@@ -2,9 +2,30 @@
 
 from sentence_transformers import SentenceTransformer
 
+## Model 1: mini-encoder
 model = SentenceTransformer('sentence-transformers/all-MiniLM-L6-v2')
 
 def get_embeddings(sentences):
     embeddings = model.encode(sentences)
     return embeddings
 
+## Model 2: intfloat/multilingual-e5-large
+from sentence_transformers import SentenceTransformer
+
+modelbig = SentenceTransformer("sentence-transformers/gtr-t5-large")
+
+"""
+sentences = [
+    "That is a happy person",
+    "That is a happy dog",
+    "That is a very happy person",
+    "Today is a sunny day"
+]
+similarities = model.similarity(embeddings, embeddings)
+print(similarities.shape)
+# [4, 4]
+
+"""
+def get_embeddings_big(sentences):
+    embeddings = modelbig.encode(sentences)
+    return embeddings