3D Neuron Segmentation Weights for Oblique and Dodt Gradient-Contrast Microscopy
The code is available here: https://github.com/podtyazhki1337/3d-neurons-segmentation-benchmark This repository contains trained model weights used in the study:
The models were trained for 3D neuron segmentation in label-free microscopy across:
- species: rat, mouse, human
- modalities: oblique illumination and Dodt gradient contrast (DGC / DODT)
Repository contents
The repository includes trained weights for five model families:
- nnU-Net v2
- 3D U-Net
- StarDist3D
- Cellpose
- micro-SAM
Weights are organized into separate folders by model family and training configuration.
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