| | --- |
| | language: rna |
| | tags: |
| | - Biology |
| | - RNA |
| | license: |
| | - agpl-3.0 |
| | size_categories: |
| | - 100K<n<1M |
| | source_datasets: |
| | - multimolecule/pdb |
| | task_categories: |
| | - text-generation |
| | - fill-mask |
| | task_ids: |
| | - language-modeling |
| | - masked-language-modeling |
| | pretty_name: pdb-rna_secondary_structure |
| | library_name: multimolecule |
| | --- |
| | |
| | # pdb-rna_secondary_structure |
| |
|
| | > [!IMPORTANT] |
| | > The pdb-rna_secondary_structure dataset is in beta test. |
| | > This dataset card may not accurately reflects the data content. |
| | > The data content and this dataset card may subject to change. |
| | > |
| | > Please contact the MultiMolecule team on GitHub issues should you have any feedback. |
| |
|
| | > [!CAUTION] |
| | > This dataset is converted from the dataset released by the authors of SPOT-RNA. |
| | > The MultiMolecule is aware of a potential issue in data quality. |
| | > We are working on cleaning the dataset. |
| |
|
| |  |
| |
|
| | RCSB Protein Data Bank (RCSB PDB) enables breakthroughs in science and education by providing access and tools for exploration, visualization, and analysis of: |
| |
|
| | - Experimentally-determined 3D structures from the Protein Data Bank (PDB) archive |
| | - Computed Structure Models (CSM) from AlphaFold DB and ModelArchive |
| |
|
| | The PDB-rna_secondary_structure is a subset of the PDB dataset focusing on the secondary structure of RNA. |
| |
|
| | ## Disclaimer |
| |
|
| | This is an UNOFFICIAL release of the RNA Secondary Structure data in the [Protein Data Bank](https://www.rcsb.org). |
| |
|
| | **The team releasing Protein Data Bank did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.** |
| |
|
| | ## Dataset Description |
| |
|
| | - **Homepage**: https://multimolecule.danling.org/datasets/pdb-rna_secondary_structure |
| | - **datasets**: https://huggingface.co/datasets/multimolecule/pdb-rna_secondary_structure |
| | - **Point of Contact**: [RCSB PDB](https://www.rcsb.org/pages/contactus) |
| |
|
| | ## Example Entry |
| |
|
| | | id | sequence | secondary_structure | |
| | | -------- | ----------------------------------- | -------------------------------- | |
| | | 1c0a-1-B | GGAGCGGUAGUUCAGUCGGUUAGAAUACCUGC... | (((((((([{{[[)<..AB).)]]}}(((... | |
| | |
| | ## License |
| | |
| | This dataset is licensed under the [AGPL-3.0 License](https://www.gnu.org/licenses/agpl-3.0.html). |
| | |
| | ```spdx |
| | SPDX-License-Identifier: AGPL-3.0-or-later |
| | ``` |
| | |
