<filename>incolume/academia_jedi/ajedi20220824_docker_ojs_php7_psql/ojs/ojs_var_www_html/plugins/reports/articles/ArticleReportPlugin.inc.php<?php

/**
 * @file plugins/reports/articles/ArticleReportPlugin.inc.php
 *
 * Copyright (c) 2014-2020 Simon Fraser University
 * Copyright (c) 2003-2020 John Willinsky
 * Distributed under the GNU GPL v3. For full terms see the file docs/COPYING.
 *
 * @class ArticleReportPlugin
 * @ingroup plugins_reports_article
 *
 * @brief Article report plugin
 */

import('lib.pkp.classes.plugins.ReportPlugin');

class ArticleReportPlugin extends ReportPlugin {
	/**
	 * @copydoc Plugin::register()
	 */
	function register($category, $path, $mainContextId = null) {
		$success = parent::register($category, $path, $mainContextId);
		$this->addLocaleData();
		return $success;
	}

	/**
	 * Get the name of this plugin. The name must be unique within
	 * its category.
	 * @return String name of plugin
	 */
	function getName() {
		return 'ArticleReportPlugin';
	}

	/**
	 * @copydoc Plugin::getDisplayName()
	 */
	function getDisplayName() {
		return __('plugins.reports.articles.displayName');
	}

	/**
	 * @copydoc Plugin::getDescriptionName()
	 */
	function getDescription() {
		return __('plugins.reports.articles.description');
	}

	/**
	 * @copydoc ReportPlugin::display()
	 */
	function display($args, $request) {
		$journal = $request->getJournal();
		$acronym = PKPString::regexp_replace("/[^A-Za-z0-9 ]/", '', $journal->getLocalizedAcronym());

		// Prepare for UTF8-encoded CSV output.
		header('content-type: text/comma-separated-values');
		header('content-disposition: attachment; filename=articles-' . $acronym . '-' . date('Ymd') . '.csv');
		$fp = fopen('php://output', 'wt');
		// Add BOM (byte order mark) to fix UTF-8 in Excel
		fprintf($fp, chr(0xEF).chr(0xBB).chr(0xBF));

		$submissionDao = DAORegistry::getDAO('SubmissionDAO'); /* @var $submissionDao SubmissionDAO */
		$editDecisionDao = DAORegistry::getDAO('EditDecisionDAO'); /* @var $editDecisionDao EditDecisionDAO */
		$stageAssignmentDao = DAORegistry::getDAO('StageAssignmentDAO'); /* @var $stageAssignmentDao StageAssignmentDAO */
		$userGroupDao = DAORegistry::getDAO('UserGroupDAO'); /* @var $userGroupDao UserGroupDAO */
		$userDao = DAORegistry::getDAO('UserDAO'); /* @var $userDao UserDAO */
		$sectionDao = DAORegistry::getDAO('SectionDAO'); /* @var $sectionDao SectionDAO */
		$submissionKeywordDao = DAORegistry::getDAO('SubmissionKeywordDAO'); /* @var $submissionKeywordDao SubmissionKeywordDAO */
		$submissionSubjectDao = DAORegistry::getDAO('SubmissionSubjectDAO'); /* @var $submissionSubjectDao SubmissionSubjectDAO */
		$submissionDisciplineDao = DAORegistry::getDAO('SubmissionDisciplineDAO'); /* @var $submissionDisciplineDao SubmissionDisciplineDAO */
		$submissionAgencyDao = DAORegistry::getDAO('SubmissionAgencyDAO'); /* @var $submissionAgencyDao SubmissionAgencyDAO */

		$editorUserGroupIds = array_map(function($userGroup) {
			return $userGroup->getId();
		}, array_filter($userGroupDao->getByContextId($journal->getId())->toArray(), function($userGroup) {
			return in_array($userGroup->getRoleId(), [ROLE_ID_MANAGER, ROLE_ID_SUB_EDITOR]);
		}));

		AppLocale::requireComponents(LOCALE_COMPONENT_APP_EDITOR, LOCALE_COMPONENT_PKP_SUBMISSION, LOCALE_COMPONENT_PKP_READER);

		// Load the data from the database and store it in an array.
		// (This must be stored before display because we won't know the data
		// dimensions until it has all been loaded.)
		$results = $sectionTitles = [];
		$submissions = $submissionDao->getByContextId($journal->getId());
		$maxAuthors = $maxEditors = $maxDecisions = 0;
		while ($submission = $submissions->next()) {
			$publication = $submission->getCurrentPublication();
			$maxAuthors = max($maxAuthors, count($publication->getData('authors')));
			$editDecisions = $editDecisionDao->getEditorDecisions($submission->getId());
			$statusMap = $submission->getStatusMap();

			// Count the highest number of decisions per editor.
			$editDecisionsPerEditor = [];
			foreach ($editDecisions as $editDecision) {
				$editorId = $editDecision['editorId'];
				$editDecisionsPerEditor[$editorId] = ($editDecisionsPerEditor[$editorId] ?? 0) + 1;
				$maxDecisions = max($maxDecisions, $editDecisionsPerEditor[$editorId]);
			}

			// Load editor and decision information
			$stageAssignmentsFactory = $stageAssignmentDao->getBySubmissionAndStageId($submission->getId());
			$editors = $editorsById = [];
			while ($stageAssignment = $stageAssignmentsFactory->next()) {
				$userId = $stageAssignment->getUserId();
				if (!in_array($stageAssignment->getUserGroupId(), $editorUserGroupIds)) continue;
				if (isset($editors[$userId])) continue;
				if (!isset($editorsById[$userId])) {
					$editor = $userDao->getById($userId);
					$editorsById[$userId] = [
						$editor->getLocalizedGivenName(),
						$editor->getLocalizedFamilyName(),
						$editor->getData('orcid'),
						$editor->getEmail(),
					];
				}
				$editors[$userId] = $editorsById[$userId];
				$maxEditors = max($maxEditors, count($editors));
			}

			// Load section title information
			$sectionId = $publication->getData('sectionId');
			if (!isset($sectionTitles[$sectionId])) {
				$section = $sectionDao->getById($sectionId);
				$sectionTitles[$sectionId] = $section->getLocalizedTitle();
			}

			// Store the submission results
			$results[] = [
				'submissionId' => $submission->getId(),
				'title' => $publication->getLocalizedFullTitle(),
				'abstract' => html_entity_decode(strip_tags($publication->getLocalizedData('abstract'))),
				'authors' => array_map(function($author) {
					return [
						$author->getLocalizedGivenName(),
						$author->getLocalizedFamilyName(),
						$author->getData('orcid'),
						$author->getData('country'),
						$author->getLocalizedData('affiliation'),
						$author->getData('email'),
						$author->getData('url'),
						html_entity_decode(strip_tags($author->getLocalizedData('biography'))),
					];
				}, $publication->getData('authors')),
				'sectionTitle' => $sectionTitles[$sectionId],
				'language' => $publication->getData('locale'),
				'coverage' => $publication->getLocalizedData('coverage'),
				'rights' => $publication->getLocalizedData('rights'),
				'source' => $publication->getLocalizedData('source'),
				'subjects' => join(', ', $submissionSubjectDao->getSubjects($submission->getCurrentPublication()->getId(), array($submission->getLocale()))[$submission->getLocale()]??[]),
				'type' => $publication->getLocalizedData('type'),
				'disciplines' => join(', ', $submissionDisciplineDao->getDisciplines($submission->getCurrentPublication()->getId(), array($submission->getLocale()))[$submission->getLocale()]??[]),
				'keywords' => join(', ', $submissionKeywordDao->getKeywords($submission->getCurrentPublication()->getId(), array($submission->getLocale()))[$submission->getLocale()]??[]),
				'agencies' => join(', ', $submissionAgencyDao->getAgencies($submission->getCurrentPublication()->getId(), array($submission->getLocale()))[$submission->getLocale()]??[]),
				'status' => $submission->getStatus() == STATUS_QUEUED ? $this->getStageLabel($submission->getStageId()) : __($statusMap[$submission->getStatus()]),
				'url' => $request->url(null, 'workflow', 'access', $submission->getId()),
				'doi' => $submission->getStoredPubId('doi'),
				'dateSubmitted' => $submission->getDateSubmitted(),
				'lastModified' => $submission->getLastModified(),
				'editors' => $editors,
				'decisions' => $editDecisions,
			];
		}

		// Build and display the column headers.
		$columns = [
			__('article.submissionId'),
			__('article.title'),
			__('article.abstract')
		];

		$authorColumnCount = $editorColumnCount = $decisionColumnCount = 0;
		for ($a=1; $a<=$maxAuthors; $a++) {
			$columns = array_merge($columns, $authorColumns = [
				__('user.givenName') . " (" . __('user.role.author') . " $a)",
				__('user.familyName') . " (" . __('user.role.author') . " $a)",
				__('user.orcid') . " (" . __('user.role.author') . " $a)",
				__('common.country') . " (" . __('user.role.author') . " $a)",
				__('user.affiliation') . " (" . __('user.role.author') . " $a)",
				__('user.email') . " (" . __('user.role.author') . " $a)",
				__('user.url') . " (" . __('user.role.author') . " $a)",
				__('user.biography') . " (" . __('user.role.author') . " $a)"
			]);
			$authorColumnCount = count($authorColumns);
		}

		$columns = array_merge($columns, [
			__('section.title'),
			__('common.language'),
			__('article.coverage'),
			__('submission.rights'),
			__('submission.source'),
			__('common.subjects'),
			__('common.type'),
			__('search.discipline'),
			__('common.keywords'),
			__('submission.supportingAgencies'),
			__('common.status'),
			__('common.url'),
			__('metadata.property.displayName.doi'),
			__('common.dateSubmitted'),
			__('submission.lastModified'),
		]);

		for ($e = 1; $e <= $maxEditors; $e++) {
			$columns = array_merge($columns, $editorColumns = [
				__('user.givenName') . " (" . __('user.role.editor') . " $e)",
				__('user.familyName') . " (" . __('user.role.editor') . " $e)",
				__('user.orcid') . " (" . __('user.role.editor') . " $e)",
				__('user.email') . " (" . __('user.role.editor') . " $e)",
			]);
			$editorColumnCount = count($editorColumns);
			for ($d = 1; $d <= $maxDecisions; $d++) {
				$columns = array_merge($columns, $decisionColumns = [
					__('submission.editorDecision') . " $d " . " (" . __('user.role.editor') . " $e)",
					__('common.dateDecided') . " $d " . " (" . __('user.role.editor') . " $e)"
				]);
				$decisionColumnCount = count($decisionColumns);
			}
		}
		fputcsv($fp, array_values($columns));

		// Display the data rows.
		foreach ($results as $result) {
			$row = [];
			foreach ($result as $column => $value) switch ($column) {
				case 'authors':
					for ($i=0; $i<$maxAuthors; $i++) {
						$row = array_merge($row, $value[$i] ?? array_fill(0, $authorColumnCount, ''));
					}
					break;
				case 'editors':
					$editorIds = array_keys($value);
					$editorEntries = array_values($value);
					for ($i=0; $i<$maxEditors; $i++) {
						$submissionHasThisEditor = isset($editorEntries[$i]);
						$row = array_merge($row, $submissionHasThisEditor ? $editorEntries[$i] : array_fill(0, $editorColumnCount, ''));
						for ($j=0; $j<$maxDecisions; $j++) {
							if (!$submissionHasThisEditor) {
								$row = array_merge($row, array_fill(0, $decisionColumnCount, ''));
								continue;
							}

							$editorId = $editorIds[$i];
							$latestDecision = $latestDecisionDate = '';
							$decisionCounter = 0;
							foreach ($result['decisions'] as $decision) {
								if ($decision['editorId'] != $editorId) continue;
								if ($j != $decisionCounter++) continue;
								$latestDecision = $this->getDecisionMessage($decision['decision']);
								$latestDecisionDate = $decision['dateDecided'];
							}
							$row = array_merge($row, [$latestDecision, $latestDecisionDate]);
						}
					}
					break;
				case 'decisions':
					break; // Handled in the 'editors' case
				default: $row[] = $value; // Other columns can be sent as they are.
			}
			fputcsv($fp, $row);
		}

		fclose($fp);
	}

	/**
	 * Get stage label
	 * @param $stageId int WORKFLOW_STAGE_ID_...
	 * @return string
	 */
	function getStageLabel($stageId) {
		switch ($stageId) {
			case WORKFLOW_STAGE_ID_SUBMISSION:
				return __('submission.submission');
			case WORKFLOW_STAGE_ID_EXTERNAL_REVIEW:
				return __('submission.review');
			case WORKFLOW_STAGE_ID_EDITING:
				return __('submission.copyediting');
			case WORKFLOW_STAGE_ID_PRODUCTION:
				return __('submission.production');
		}
		return '';
	}

	/**
	 * Get decision message
	 * @param $decision int SUBMISSION_EDITOR_DECISION_... or SUBMISSION_EDITOR_RECOMMEND_...
	 * @return string
	 */
	function getDecisionMessage($decision) {
		import('classes.workflow.EditorDecisionActionsManager'); // SUBMISSION_EDITOR_...
		switch ($decision) {
			case SUBMISSION_EDITOR_DECISION_ACCEPT:
				return __('editor.submission.decision.accept');
			case SUBMISSION_EDITOR_DECISION_PENDING_REVISIONS:
				return __('editor.submission.decision.requestRevisions');
			case SUBMISSION_EDITOR_DECISION_RESUBMIT:
				return __('editor.submission.decision.resubmit');
			case SUBMISSION_EDITOR_DECISION_DECLINE:
				return __('editor.submission.decision.decline');
			case SUBMISSION_EDITOR_DECISION_SEND_TO_PRODUCTION:
				return __('editor.submission.decision.sendToProduction');
			case SUBMISSION_EDITOR_DECISION_EXTERNAL_REVIEW:
				return __('editor.submission.decision.sendExternalReview');
			case SUBMISSION_EDITOR_DECISION_INITIAL_DECLINE:
				return __('editor.submission.decision.decline');
			case SUBMISSION_EDITOR_RECOMMEND_ACCEPT:
				return __('editor.submission.recommendation.display', array('recommendation' => __('editor.submission.decision.accept')));
			case SUBMISSION_EDITOR_RECOMMEND_DECLINE:
				return __('editor.submission.recommendation.display', array('recommendation' => __('editor.submission.decision.decline')));
			case SUBMISSION_EDITOR_RECOMMEND_PENDING_REVISIONS:
				return __('editor.submission.recommendation.display', array('recommendation' => __('editor.submission.decision.requestRevisions')));
			case SUBMISSION_EDITOR_RECOMMEND_RESUBMIT:
				return __('editor.submission.recommendation.display', array('recommendation' => __('editor.submission.decision.resubmit')));
			default:
				return '';
		}
	}
}

